If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ), 'gf_id' => 'HOM05D000912', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000912' ), 'data_identifier' => 'HOM05D000912', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000912', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40540' => 'bna', 'A02p14080' => 'bna', 'A02p22450' => 'bna', 'A03p37920' => 'bna', 'A05p36510' => 'bna', 'A06p12680' => 'bna', 'A06p12690' => 'bna', 'A07p32670' => 'bna', 'A07p44140' => 'bna', 'A08p31320' => 'bna', 'A09p60770' => 'bna', 'A09p60780' => 'bna', 'Aa31LG10G8400' => 'aar', 'Aa31LG4G1980' => 'aar', 'Aa31LG7G1170' => 'aar', 'Aa31LG7G1180' => 'aar', 'Aa31LG8G230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.175' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4434' => 'aag', 'Actinidia00648' => 'ach', 'Actinidia01136' => 'ach', 'Actinidia03450' => 'ach', 'Actinidia18119' => 'ach', 'Actinidia21664' => 'ach', 'Actinidia21665' => 'ach', 'Actinidia21666' => 'ach', 'Actinidia21901' => 'ach', 'Actinidia21902' => 'ach', 'Actinidia28400' => 'ach', 'Actinidia31119' => 'ach', 'Actinidia31120' => 'ach', 'Actinidia34122' => 'ach', 'Actinidia34123' => 'ach', 'Actinidia34124' => 'ach', 'Actinidia38823' => 'ach', 'Ah.08g218030' => 'amhyb', 'Ah.15g094210' => 'amhyb', 'AL1G28870' => 'aly', 'AL1G28880' => 'aly', 'AL1G28890' => 'aly', 'AL1G64230' => 'aly', 'AL2G25740' => 'aly', 'AL2G39460' => 'aly', 'AL3G24680' => 'aly', 'Aqoxy3G00371' => 'aox', 'Aqoxy4G00664' => 'aox', 'Aqoxy7G02531' => 'aox', 'Aqoxy7G02557' => 'aox', 'Aqoxy7G02558' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L678P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2706L4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.400PFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WKR13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W5653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2QKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM6RAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ05LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QB55VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S20USA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTJ3VC' => 'arhy', 'AT1G16705' => 'ath', 'AT1G16710' => 'ath', 'AT1G16720' => 'ath', 'AT1G55970' => 'ath', 'AT1G67220' => 'ath', 'AT1G79000' => 'ath', 'AT3G12980' => 'ath', 'ATR0162G001' => 'atr', 'ATR0341G001' => 'atr', 'ATR0404G002' => 'atr', 'ATR0492G001' => 'atr', 'ATR0598G184' => 'atr', 'ATR0598G238' => 'atr', 'ATR0626G080' => 'atr', 'ATR0629G023' => 'atr', 'ATR0680G214' => 'atr', 'ATR0680G289' => 'atr', 'ATR0680G294' => 'atr', 'ATR0680G403' => 'atr', 'ATR0724G053' => 'atr', 'ATR0829G016' => 'atr', 'ATR0829G182' => 'atr', 'ATR0928G001' => 'atr', 'ATR1125G026' => 'atr', 'Atru.chr10.1916' => 'acertr', 'Atru.chr3.4082' => 'acertr', 'Atru.chr3.4083' => 'acertr', 'AUR62001296' => 'cqu', 'AUR62001304' => 'cqu', 'AUR62008957' => 'cqu', 'AUR62014546' => 'cqu', 'AUR62025681' => 'cqu', 'AUR62025686' => 'cqu', 'BcaB02g10789' => 'bca', 'BcaB03g13036' => 'bca', 'BcaB03g13037' => 'bca', 'BcaB03g15340' => 'bca', 'BcaB04g18744' => 'bca', 'BcaB04g21020' => 'bca', 'BcaB04g21025' => 'bca', 'BcaB04g21028' => 'bca', 'BcaB04g21030' => 'bca', 'BcaB05g24248' => 'bca', 'BcaB05g25166' => 'bca', 'BcaB06g25495' => 'bca', 'BcaC01g04048' => 'bca', 'BcaC03g14818' => 'bca', 'BcaC03g15858' => 'bca', 'BcaC05g24902' => 'bca', 'BcaC05g25532' => 'bca', 'BcaC05g25533' => 'bca', 'BcaC05g29219' => 'bca', 'BcaC07g38808' => 'bca', 'BcaC07g38809' => 'bca', 'BcaC07g41460' => 'bca', 'BcaC07g41461' => 'bca', 'BcaC07g41462' => 'bca', 'BcaC08g47463' => 'bca', 'BcaC08g47464' => 'bca', 'BcaC09g48285' => 'bca', 'BolC1t05157H' => 'bol', 'BolC2t08422H' => 'bol', 'BolC2t09626H' => 'bol', 'BolC3t16875H' => 'bol', 'BolC5t29594H' => 'bol', 'BolC5t30213H' => 'bol', 'BolC5t30214H' => 'bol', 'BolC5t34162H' => 'bol', 'BolC6t38978H' => 'bol', 'BolC6t40305H' => 'bol', 'BolC8t49377H' => 'bol', 'BolC8t51978H' => 'bol', 'BolC8t51979H' => 'bol', 'BraA01t04088Z' => 'bra', 'BraA02t06471Z' => 'bra', 'BraA02t07249Z' => 'bra', 'BraA03t12946Z' => 'bra', 'BraA05t22452Z' => 'bra', 'BraA06t24428Z' => 'bra', 'BraA06t24429Z' => 'bra', 'BraA07t30891Z' => 'bra', 'BraA07t31922Z' => 'bra', 'BraA08t35055Z' => 'bra', 'BraA09t41450Z' => 'bra', 'BraA09t41451Z' => 'bra', 'C01p52170' => 'bna', 'C02p22690' => 'bna', 'C02p36130' => 'bna', 'C03p46030' => 'bna', 'C05p08430' => 'bna', 'C05p14980' => 'bna', 'C05p14990' => 'bna', 'C05p54920' => 'bna', 'C06p38850' => 'bna', 'C06p52870' => 'bna', 'C08p17500' => 'bna', 'C08p44350' => 'bna', 'C08p44360' => 'bna', 'C08p44370' => 'bna', 'CAN.G186.18' => 'can', 'CAN.G186.19' => 'can', 'CAN.G194.13' => 'can', 'CAN.G282.75' => 'can', 'CAN.G497.8' => 'can', 'CAN.G68.13' => 'can', 'CAN.G880.12' => 'can', 'CAN.G880.15' => 'can', 'CAN.G880.16' => 'can', 'CANSAT01G2443' => 'cansat', 'CANSAT01G3172' => 'cansat', 'CARHR017170' => 'chi', 'CARHR017180' => 'chi', 'CARHR045720' => 'chi', 'CARHR059680' => 'chi', 'CARHR072670' => 'chi', 'CARHR087520' => 'chi', 'Carub.0001s1644' => 'cru', 'Carub.0001s1645' => 'cru', 'Carub.0001s1646' => 'cru', 'Carub.0001s4458' => 'cru', 'Carub.0002s1350' => 'cru', 'Carub.0002s2587' => 'cru', 'Carub.0003s1233' => 'cru', 'Ca_03787_v3' => 'car', 'Ca_03788_v3' => 'car', 'Ca_10506_v3' => 'car', 'Ca_10507_v3' => 'car', 'Ca_14089_v3' => 'car', 'Ca_26250_v3' => 'car', 'Ca_26347_v3' => 'car', 'CBR_g37146' => 'cbr', 'CBR_g37148' => 'cbr', 'CBR_g46441' => 'cbr', 'CBR_g50840' => 'cbr', 'Cc07_g05030' => 'ccan', 'Cc11_g00030' => 'ccan', 'Cc11_g00260' => 'ccan', 'CDE04G0072' => 'cde', 'CDE04G1357' => 'cde', 'CDE05G1860' => 'cde', 'Cfa002158' => 'cfa', 'Cfa002159' => 'cfa', 'Cfa014793' => 'cfa', 'Ciclev10010922m.g' => 'ccl', 'Ciclev10027674m.g' => 'ccl', 'Ciclev10028057m.g' => 'ccl', 'CiPaw.01G092100' => 'cil', 'CiPaw.02G050600' => 'cil', 'CiPaw.02G051600' => 'cil', 'ClCG05G010460' => 'cla', 'ClCG10G000030' => 'cla', 'COL.COLO4_16206' => 'col', 'COL.COLO4_26805' => 'col', 'COL.COLO4_26806' => 'col', 'COL.COLO4_38294' => 'col', 'Cpa.g.sc10.17' => 'cpa', 'Cpa.g.sc179.37' => 'cpa', 'Cpa.g.sc4293.2' => 'cpa', 'Cpa.g.sc818.3' => 'cpa', 'Cre03.g189650' => 'cre', 'Cre03.g212641' => 'cre', 'Cre03.g212977' => 'cre', 'Cre13.g578650' => 'cre', 'CsaV3_3G000040' => 'csa', 'CsaV3_3G018030' => 'csa', 'CSS0005184' => 'camsi', 'CSS0006911' => 'camsi', 'CSS0008849' => 'camsi', 'CSS0011648' => 'camsi', 'CSS0023221' => 'camsi', 'CSS0035079' => 'camsi', 'CSS0038016' => 'camsi', 'CSS0042059' => 'camsi', 'CSS0044878' => 'camsi', 'DCAR_007521' => 'dca', 'DCAR_010975' => 'dca', 'DCAR_011706' => 'dca', 'DCAR_013192' => 'dca', 'DCAR_023504' => 'dca', 'DCAR_028447' => 'dca', 'Dinv20312' => 'din', 'Dinv33924' => 'din', 'Dinv37769' => 'din', 'Dinv37770' => 'din', 'Duzib192G0163' => 'dzi', 'Duzib235G0834' => 'dzi', 'Duzib235G1169' => 'dzi', 'Duzib268G0460' => 'dzi', 'ECA229G0002' => 'eca', 'ECA232G1388' => 'eca', 'ECA232G2502' => 'eca', 'ECA233G4728' => 'eca', 'ECA238G2648' => 'eca', 'ECA246G0452' => 'eca', 'ECA246G2333' => 'eca', 'ECA246G3011' => 'eca', 'ECA246G4464' => 'eca', 'ECA247G1226' => 'eca', 'EL10Ac2g04620' => 'bvu', 'EL10Ac4g08495' => 'bvu', 'EL10Ac7g18098' => 'bvu', 'EL10Ac7g18104' => 'bvu', 'Eucgr.E00691' => 'egr', 'Eucgr.E00712' => 'egr', 'Eucgr.E00932' => 'egr', 'Eucgr.F04061' => 'egr', 'Eucgr.F04062' => 'egr', 'Eucgr.F04065' => 'egr', 'Eucgr.J01461' => 'egr', 'FAN02G2903' => 'fan', 'FAN02G3487' => 'fan', 'FAN02G3835' => 'fan', 'FAN05G1586' => 'fan', 'FAN05G3420' => 'fan', 'FAN05G4424' => 'fan', 'FAN09G0278' => 'fan', 'FAN09G1960' => 'fan', 'FAN09G3798' => 'fan', 'FAN09G4355' => 'fan', 'FAN14G0321' => 'fan', 'FAN14G2550' => 'fan', 'FAN14G3458' => 'fan', 'FAN14G4043' => 'fan', 'FvH4_6g00740' => 'fve', 'FvH4_6g36320' => 'fve', 'FvH4_6g36340' => 'fve', 'FvH4_6g45470' => 'fve', 'Glyma.07G000400' => 'gma', 'Glyma.07G000500' => 'gma', 'Glyma.08G226600' => 'gma', 'Glyma.08G226700' => 'gma', 'Glyma.15G000300' => 'gma', 'Glyma.19G040700' => 'gma', 'Glyma.19G044000' => 'gma', 'Gohir.A05G116800' => 'ghi', 'Gohir.A05G116900' => 'ghi', 'Gohir.A06G182500' => 'ghi', 'Gohir.A08G036100' => 'ghi', 'Gohir.A10G000900' => 'ghi', 'Gohir.D05G117700' => 'ghi', 'Gohir.D05G117800' => 'ghi', 'Gohir.D06G118100' => 'ghi', 'Gohir.D06G189400' => 'ghi', 'Gohir.D08G046800' => 'ghi', 'Gohir.D10G001100' => 'ghi', 'Gorai.004G046000' => 'gra', 'Gorai.009G121600' => 'gra', 'Gorai.009G121700' => 'gra', 'Gorai.010G135700' => 'gra', 'Gorai.010G222100' => 'gra', 'Gorai.011G001400' => 'gra', 'GSVIVG01029441001' => 'vvi', 'GSVIVG01029442001' => 'vvi', 'GSVIVG01029443001' => 'vvi', 'GSVIVG01031074001' => 'vvi', 'HanXRQChr05g0150621' => 'han', 'HanXRQChr05g0150631' => 'han', 'HanXRQChr08g0212201' => 'han', 'HanXRQChr09g0266961' => 'han', 'HanXRQChr09g0277451' => 'han', 'HanXRQChr10g0283761' => 'han', 'HanXRQChr11g0326411' => 'han', 'HanXRQChr11g0326491' => 'han', 'HanXRQChr11g0333181' => 'han', 'HanXRQChr14g0452331' => 'han', 'HanXRQChr14g0452371' => 'han', 'Haze_04153' => 'cav', 'Haze_16247' => 'cav', 'Haze_16248' => 'cav', 'Hma1.2p1_0073F.1_g038580' => 'hma', 'Hma1.2p1_0108F.1_g051710' => 'hma', 'Hma1.2p1_0136F.1_g062040' => 'hma', 'Hma1.2p1_0960F.1_g241630' => 'hma', 'HPP92_015272' => 'vpl', 'HPP92_020426' => 'vpl', 'HPP92_020427' => 'vpl', 'HPP92_020429' => 'vpl', 'HPP92_021885' => 'vpl', 'HPP92_021886' => 'vpl', 'Hund05659' => 'sun', 'Hund16111' => 'sun', 'Hund18548' => 'sun', 'Hund18549' => 'sun', 'Lalb_Chr04g0258151' => 'lal', 'Lalb_Chr04g0264771' => 'lal', 'Lalb_Chr04g0264781' => 'lal', 'Lalb_Chr19g0140521' => 'lal', 'Lj2g0027369' => 'lja', 'Lj3g0002366' => 'lja', 'Lj3g0006194' => 'lja', 'Lj3g0011659' => 'lja', 'Lj3g0019221' => 'lja', 'Lj3g0019292' => 'lja', 'Lj4A131T25' => 'lonja', 'Lj4A131T26' => 'lonja', 'Lj5g0012560' => 'lja', 'Lj5g0024138' => 'lja', 'Lj5g0024613' => 'lja', 'Lj7A9G78' => 'lonja', 'Lj7C414G2' => 'lonja', 'Lj9A544G34' => 'lonja', 'Lsat_1_v5_gn_0_11660' => 'lsa', 'Lsat_1_v5_gn_1_103021' => 'lsa', 'Lsat_1_v5_gn_1_14140' => 'lsa', 'Lsat_1_v5_gn_1_24881' => 'lsa', 'Lsat_1_v5_gn_2_35201' => 'lsa', 'Lsat_1_v5_gn_2_86640' => 'lsa', 'Lsat_1_v5_gn_3_15121' => 'lsa', 'Lsat_1_v5_gn_3_41961' => 'lsa', 'Lsat_1_v5_gn_3_74600' => 'lsa', 'Lsat_1_v5_gn_4_106121' => 'lsa', 'Lsat_1_v5_gn_4_129780' => 'lsa', 'Lsat_1_v5_gn_4_131340' => 'lsa', 'Lsat_1_v5_gn_4_181020' => 'lsa', 'Lsat_1_v5_gn_4_85980' => 'lsa', 'Lsat_1_v5_gn_5_11101' => 'lsa', 'Lsat_1_v5_gn_5_133740' => 'lsa', 'Lsat_1_v5_gn_5_8340' => 'lsa', 'Lsat_1_v5_gn_6_111241' => 'lsa', 'Lsat_1_v5_gn_6_46640' => 'lsa', 'Manes.01G107500' => 'mes', 'Manes.06G180101' => 'mes', 'Manes.14G000600' => 'mes', 'Manes.14G000700' => 'mes', 'Mapoly0022s0049' => 'mpo', 'Mapoly0072s0083' => 'mpo', 'MBI10_g35800_MAGBIO' => 'mbi', 'MBI10_g35801_MAGBIO' => 'mbi', 'MBI10_g35802_MAGBIO' => 'mbi', 'MBI16_g40723_MAGBIO' => 'mbi', 'MBI16_g40724_MAGBIO' => 'mbi', 'MBI16_g43957_MAGBIO' => 'mbi', 'MCO03G114' => 'mco', 'MCO03G119' => 'mco', 'MCO08G214' => 'mco', 'MD07G1017500' => 'mdo', 'MD07G1024000' => 'mdo', 'MD07G1024200' => 'mdo', 'MD09G1082700' => 'mdo', 'MD09G1082800' => 'mdo', 'MD09G1169900' => 'mdo', 'MD09G1170000' => 'mdo', 'MD17G1073200' => 'mdo', 'MD17G1157000' => 'mdo', 'MD17G1157100' => 'mdo', 'MD17G1157200' => 'mdo', 'MD17G1157500' => 'mdo', 'Medtr0299s0030' => 'mtr', 'Medtr1g047930' => 'mtr', 'Medtr1g047940' => 'mtr', 'Medtr2g037415' => 'mtr', 'Medtr2g082655' => 'mtr', 'Medtr3g055360' => 'mtr', 'Medtr3g101100' => 'mtr', 'Medtr3g107960' => 'mtr', 'Medtr4g005050' => 'mtr', 'Medtr4g005070' => 'mtr', 'Medtr5g013670' => 'mtr', 'Medtr5g017020' => 'mtr', 'Medtr5g085310' => 'mtr', 'Medtr5g085317' => 'mtr', 'Medtr6g017000' => 'mtr', 'Medtr6g017010' => 'mtr', 'Medtr6g017120' => 'mtr', 'Medtr6g017130' => 'mtr', 'Medtr6g017135' => 'mtr', 'Medtr6g017140' => 'mtr', 'Medtr7g105660' => 'mtr', 'MELO3C013698.2' => 'cme', 'MELO3C019564.2' => 'cme', 'MELO3C025361.2' => 'cme', 'Migut.B00598' => 'egut', 'Migut.H00534' => 'egut', 'Migut.H01257' => 'egut', 'Migut.M00129' => 'egut', 'Migut.M00418' => 'egut', 'MSTRG.14869' => 'ama', 'MSTRG.16592' => 'ama', 'MSTRG.6589' => 'ama', 'Nitab4.5_0000069g0570' => 'nta', 'Nitab4.5_0000129g0360' => 'nta', 'Nitab4.5_0000348g0140' => 'nta', 'Nitab4.5_0001070g0120' => 'nta', 'Nitab4.5_0003699g0060' => 'nta', 'Nitab4.5_0004420g0020' => 'nta', 'Nitab4.5_0009272g0050' => 'nta', 'Nitab4.5_0010895g0020' => 'nta', 'Nn2g12790' => 'nnu', 'Nn4g23680' => 'nnu', 'Nn4g24647' => 'nnu', 'Nn8g41283' => 'nnu', 'Nn8g41285' => 'nnu', 'Oeu001602.1' => 'oeu', 'Oeu007970.1' => 'oeu', 'Oeu011002.1' => 'oeu', 'Oeu025119.3' => 'oeu', 'Oeu027255.1' => 'oeu', 'Oeu035306.2' => 'oeu', 'Oeu036757.1' => 'oeu', 'Oeu043857.3' => 'oeu', 'Oeu043858.1' => 'oeu', 'Oeu043859.1' => 'oeu', 'Oeu054518.1' => 'oeu', 'Oeu061990.1' => 'oeu', 'Os01g0246100' => 'osa', 'Os02g0137450' => 'osa', 'Os02g0137500' => 'osa', 'Os02g0137700' => 'osa', 'Os06g0704700' => 'osa', 'Os06g0704800' => 'osa', 'Peaxi162Scf00097g01218' => 'pax', 'Peaxi162Scf00097g01412' => 'pax', 'Peaxi162Scf00329g00813' => 'pax', 'Peaxi162Scf01056g00249' => 'pax', 'Peaxi162Scf01205g00156' => 'pax', 'PGR102G0551' => 'pgr', 'PGSC0003DMG400007658' => 'stu', 'PGSC0003DMG400015604' => 'stu', 'Phvul.003G032800' => 'pvu', 'Phvul.005G082300' => 'pvu', 'Phvul.010G165800' => 'pvu', 'Phvul.010G165900' => 'pvu', 'Potri.004G104201' => 'ptr', 'Potri.007G003301' => 'ptr', 'Potri.007G003400' => 'ptr', 'Potri.007G003500' => 'ptr', 'Potri.014G000400' => 'ptr', 'Potri.014G000500' => 'ptr', 'Potri.019G036800' => 'ptr', 'Pp3c12_3350' => 'ppa', 'Pp3c12_3460' => 'ppa', 'Pp3c12_90' => 'ppa', 'Pp3c16_11160' => 'ppa', 'Pp3c17_2460' => 'ppa', 'Pp3c25_13620' => 'ppa', 'Pp3c25_2890' => 'ppa', 'PRCOL_00001268' => 'pco', 'PRCOL_00007086' => 'pco', 'Prupe.3G028100' => 'ppe', 'Prupe.3G028200' => 'ppe', 'Prupe.3G240900' => 'ppe', 'Prupe.7G015400' => 'ppe', 'Prupe.7G030400' => 'ppe', 'Psat0s13672g0040' => 'psa', 'Psat0s4118g0080' => 'psa', 'Psat0s4447g0040' => 'psa', 'Psat1g061280' => 'psa', 'Psat1g061920' => 'psa', 'Psat2g092600' => 'psa', 'Psat3g085280' => 'psa', 'Psat3g106040' => 'psa', 'Psat7g264600' => 'psa', 'Psat7g264640' => 'psa', 'PSO017G2537' => 'pso', 'PSO017G5685' => 'pso', 'PSO017G7270' => 'pso', 'PSO017G7399' => 'pso', 'PSO063G4559' => 'pso', 'PSO170G2457' => 'pso', 'PSO170G3675' => 'pso', 'PSO170G3725' => 'pso', 'PSO170G5414' => 'pso', 'QL02p053069' => 'qlo', 'QL02p053100' => 'qlo', 'QL05p085111' => 'qlo', 'QL05p085123' => 'qlo', 'RcHm_v2.0_Chr2g0148331' => 'rch', 'RcHm_v2.0_Chr2g0148341' => 'rch', 'RcHm_v2.0_Chr2g0149711' => 'rch', 'RcHm_v2.0_Chr2g0163411' => 'rch', 'RcHm_v2.0_Chr3g0448221' => 'rch', 'Rhsim03G0000100' => 'rsi', 'Rhsim08G0252300' => 'rsi', 'Rhsim08G0252400' => 'rsi', 'Rhsim08G0252500' => 'rsi', 'Rhsim08G0252600' => 'rsi', 'Rhsim08G0252700' => 'rsi', 'Rhsim10G0064300' => 'rsi', 'Sabra04G0077300' => 'sbr', 'Sabra04G0077400' => 'sbr', 'Sabra07G0002500' => 'sbr', 'Sabra14G0003000' => 'sbr', 'Sabra14G0003100' => 'sbr', 'SalBow5G0605' => 'sbo', 'SalBow5G2613' => 'sbo', 'Sc10g0001380' => 'sci', 'Sc10g0001390' => 'sci', 'Sc15g0001160' => 'sci', 'Sc23g0006050' => 'sci', 'Sed0004063' => 'sed', 'Sed0017205' => 'sed', 'Sed0017344' => 'sed', 'SEGI_02527' => 'sgi', 'SEGI_03939' => 'sgi', 'SEGI_07336' => 'sgi', 'SEGI_07540' => 'sgi', 'SEGI_09479' => 'sgi', 'SEGI_09830' => 'sgi', 'SEGI_13026' => 'sgi', 'SEGI_17007' => 'sgi', 'SEGI_20646' => 'sgi', 'SEGI_26914' => 'sgi', 'SEGI_27102' => 'sgi', 'SEGI_27520' => 'sgi', 'SEGI_29442' => 'sgi', 'SEGI_30611' => 'sgi', 'SEGI_31217' => 'sgi', 'SGA_v2.0_scaffold14G07132' => 'sas', 'SGA_v2.0_scaffold181G39745' => 'sas', 'SGA_v2.0_scaffold335G49142' => 'sas', 'SGA_v2.0_scaffold4498G54493' => 'sas', 'SGA_v2.0_scaffold49G18366' => 'sas', 'SGA_v2.0_scaffold73G24406' => 'sas', 'SHI05865' => 'shi', 'SHI05866' => 'shi', 'SHI05867' => 'shi', 'SMO119G0328' => 'smo', 'SMO228G0113' => 'smo', 'SMO337G0061' => 'smo', 'SMO356G0028' => 'smo', 'SMO356G0343' => 'smo', 'Solyc01g008120.4' => 'sly', 'Solyc02g089790.4' => 'sly', 'Solyc04g008610.3' => 'sly', 'Solyc05g006180.3' => 'sly', 'Sopen01g003670' => 'spe', 'Sopen02g034480' => 'spe', 'Sopen04g003770' => 'spe', 'Sopen05g002190' => 'spe', 'Sopen08g006330' => 'spe', 'Sp1g14850' => 'spa', 'Sp1g14860' => 'spa', 'Sp1g14870' => 'spa', 'Sp1g41590' => 'spa', 'Sp3g11140' => 'spa', 'Sp5g22160' => 'spa', 'Sp5g34050' => 'spa', 'TAR007G0001' => 'tar', 'TAR383G0444' => 'tar', 'TAR383G0770' => 'tar', 'TAR383G0774' => 'tar', 'TAR626G1203' => 'tar', 'TAR626G1580' => 'tar', 'TAR636G0354' => 'tar', 'TAR636G3629' => 'tar', 'THA.LOC104805969' => 'tha', 'THA.LOC104808111' => 'tha', 'THA.LOC104810279' => 'tha', 'THA.LOC104812346' => 'tha', 'THA.LOC104813621' => 'tha', 'THA.LOC104813622' => 'tha', 'Thecc.04G140300' => 'tca', 'Thecc.06G049100' => 'tca', 'Thecc.06G049200' => 'tca', 'Thecc.10G140900' => 'tca', 'Thhalv10006544m.g' => 'esa', 'Thhalv10007626m.g' => 'esa', 'Thhalv10012306m.g' => 'esa', 'Thhalv10018000m.g' => 'esa', 'Thhalv10019679m.g' => 'esa', 'Thhalv10019887m.g' => 'esa', 'TPR.G19978' => 'tpr', 'TPR.G20615' => 'tpr', 'TPR.G21997' => 'tpr', 'TPR.G25007' => 'tpr', 'TPR.G25018' => 'tpr', 'TPR.G38709' => 'tpr', 'TPR.G38732' => 'tpr', 'TPR.G39862' => 'tpr', 'TPR.G9664' => 'tpr', 'TWI12G0824' => 'twi', 'TWI18G1361' => 'twi', 'TWI63G0571' => 'twi', 'TWI63G1237' => 'twi', 'TWI75G1320' => 'twi', 'TWI75G1589' => 'twi', 'unitig_0.g720' => 'ugi', 'unitig_26.g9061' => 'ugi', 'unitig_62.g23240' => 'ugi', 'vmacro05578' => 'vma', 'vmacro12581' => 'vma', 'vmacro18721' => 'vma', 'vmacro21728' => 'vma', 'vmacro21729' => 'vma', 'vmacro21730' => 'vma', 'VMungo0331G0786' => 'vmu', 'VMungo0331G0828' => 'vmu', 'VMungo1080G0049' => 'vmu', 'VMungo1080G1388' => 'vmu', 'VMungo1215G2223' => 'vmu', 'Zm00001eb030540' => 'zma', 'Zm00001eb135220' => 'zma', 'Zm00001eb157020' => 'zma', 'Zm00001eb178750' => 'zma', 'Zm00001eb209230' => 'zma', 'Zm00001eb227320' => 'zma', 'Zm00001eb231830' => 'zma' ) $gf_id = 'HOM05D000912' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000912' ) $data_identifier = 'HOM05D000912' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 17, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 2, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 3, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 4, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 19, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 21, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 1, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 4, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb231830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1